J3_1VX2_010

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAGGA*UCCCAGUAA*UGAUUAAG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|1218
1VX2|1|2|C|1219
1VX2|1|2|A|1220
1VX2|1|2|G|1221
1VX2|1|2|G|1222
1VX2|1|2|A|1223
*
1VX2|1|2|U|1643
1VX2|1|2|C|1644
1VX2|1|2|C|1645
1VX2|1|2|C|1646
1VX2|1|2|A|1647
1VX2|1|2|G|1648
1VX2|1|2|U|1649
1VX2|1|2|A|1650
1VX2|1|2|A|1651
*
1VX2|1|2|U|1673
1VX2|1|2|G|1674
1VX2|1|2|A|1675
1VX2|1|2|U|1676
1VX2|1|2|U|1677
1VX2|1|2|A|1678
1VX2|1|2|A|1679
1VX2|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain c

Ribosomal protein eS28