J3_1VX2_012

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CACUGACUG*CAUUCGUGAUGGGGAUCG*CAUGAACGAG

Length

37 nucleotides

Bulged bases

1VX2|1|2|U|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|1532
1VX2|1|2|A|1533
1VX2|1|2|C|1534
1VX2|1|2|U|1535
1VX2|1|2|G|1536
1VX2|1|2|A|1537
1VX2|1|2|C|1538
1VX2|1|2|U|1539
1VX2|1|2|G|1540
*
1VX2|1|2|C|1593
1VX2|1|2|A|1594
1VX2|1|2|U|1595
1VX2|1|2|U|1596
1VX2|1|2|C|1597
1VX2|1|2|G|1598
1VX2|1|2|U|1599
1VX2|1|2|G|1600
1VX2|1|2|A|1601
1VX2|1|2|U|1602
1VX2|1|2|G|1603
1VX2|1|2|G|1604
1VX2|1|2|G|1605
1VX2|1|2|G|1606
1VX2|1|2|A|1607
1VX2|1|2|U|1608
1VX2|1|2|C|1609
1VX2|1|2|G|1610
*
1VX2|1|2|C|1629
1VX2|1|2|A|1630
1VX2|1|2|U|1631
1VX2|1|2|G|1632
1VX2|1|2|A|1633
1VX2|1|2|A|1634
1VX2|1|2|C|1635
1VX2|1|2|G|1636
1VX2|1|2|A|1637
1VX2|1|2|G|1638

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain S

Ribosomal protein uS13

Chain T

Ribosomal protein eS19

Chain Z

Ribosomal protein es25