J3_1VX2_013

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUAGCUCAGGGUAGAGCAGG*CCGUGUCC*GU

Length

30 nucleotides

Bulged bases

1VX2|1|5|G|18, 1VX2|1|5|G|19, 1VX2|1|5|U|20, 1VX2|1|5|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|5|A|7
1VX2|1|5|U|8
1VX2|1|5|A|9
1VX2|1|5|G|10
1VX2|1|5|C|11
1VX2|1|5|U|12
1VX2|1|5|C|13
1VX2|1|5|A|14
1VX2|1|5|G|15
1VX2|1|5|G|18
1VX2|1|5|G|19
1VX2|1|5|U|20
1VX2|1|5|A|21
1VX2|1|5|G|22
1VX2|1|5|A|23
1VX2|1|5|G|24
1VX2|1|5|C|25
1VX2|1|5|A|26
1VX2|1|5|G|27
1VX2|1|5|G|28
*
1VX2|1|5|C|42
1VX2|1|5|C|43
1VX2|1|5|G|44
1VX2|1|5|U|45
1VX2|1|5|G|46
1VX2|1|5|U|47
1VX2|1|5|C|48
1VX2|1|5|C|49
*
1VX2|1|5|G|65
1VX2|1|5|U|66

Current chains

Chain 5

A/P tRNA

Nearby chains

Chain e

Ribosomal protein eS30