J3_1VX3_006

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

1VX3|1|5|C|4116, 1VX3|1|5|U|4117, 1VX3|1|5|U|4118, 1VX3|1|5|C|4119, 1VX3|1|5|U|4120, 1VX3|1|5|G|4121, 1VX3|1|5|A|4157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX3_006 not in the Motif Atlas

Geometric match to J3_8CRE_020

Geometric discrepancy: 0.2973

The information below is about J3_8CRE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

1VX3|1|5|G|4091
1VX3|1|5|G|4092
1VX3|1|5|G|4093
1VX3|1|5|G|4094
*
1VX3|1|5|C|4114
1VX3|1|5|G|4115
1VX3|1|5|C|4116
1VX3|1|5|U|4117
1VX3|1|5|U|4118
1VX3|1|5|C|4119
1VX3|1|5|U|4120
1VX3|1|5|G|4121
1VX3|1|5|G|4122
1VX3|1|5|C|4123
1VX3|1|5|G|4124
1VX3|1|5|C|4125
1VX3|1|5|C|4126
1VX3|1|5|A|4127
1VX3|1|5|A|4128
1VX3|1|5|G|4129
*
1VX3|1|5|C|4155
1VX3|1|5|G|4156
1VX3|1|5|A|4157
1VX3|1|5|C|4158

Current chains

Chain 5

28S ribosomal RNA

Nearby chains