J3_1VX6_002

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAACAAG*UUAAAA*UAUACAGUAC

Length

25 nucleotides

Bulged bases

1VX6|1|A|A|448, 1VX6|1|A|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|G|446
1VX6|1|A|A|447
1VX6|1|A|A|448
1VX6|1|A|A|449
1VX6|1|A|A|450
1VX6|1|A|C|451
1VX6|1|A|A|452
1VX6|1|A|A|453
1VX6|1|A|G|454
*
1VX6|1|A|U|501
1VX6|1|A|U|502
1VX6|1|A|A|503
1VX6|1|A|A|504
1VX6|1|A|A|505
1VX6|1|A|A|506
*
1VX6|1|A|U|692
1VX6|1|A|A|693
1VX6|1|A|U|694
1VX6|1|A|A|695
1VX6|1|A|C|696
1VX6|1|A|A|697
1VX6|1|A|G|698
1VX6|1|A|U|699
1VX6|1|A|A|700
1VX6|1|A|C|701

Current chains

Chain A

28S ribosomal RNA

Nearby chains