J3_1VX6_003

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GAGGAAUUUUAAA*UUAAGUU

Length

23 nucleotides

Bulged bases

1VX6|1|A|A|646, 1VX6|1|A|U|647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|A|512
1VX6|1|A|U|513
1VX6|1|A|C|514
*
1VX6|1|A|G|641
1VX6|1|A|A|642
1VX6|1|A|G|643
1VX6|1|A|G|644
1VX6|1|A|A|645
1VX6|1|A|A|646
1VX6|1|A|U|647
1VX6|1|A|U|648
1VX6|1|A|U|649
1VX6|1|A|U|650
1VX6|1|A|A|651
1VX6|1|A|A|652
1VX6|1|A|A|653
*
1VX6|1|A|U|680
1VX6|1|A|U|681
1VX6|1|A|A|682
1VX6|1|A|A|683
1VX6|1|A|G|684
1VX6|1|A|U|685
1VX6|1|A|U|686

Current chains

Chain A

28S ribosomal RNA

Nearby chains