J3_1VX6_009

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAG*UGUUUAAAG*CGU

Length

16 nucleotides

Bulged bases

1VX6|1|A|U|1704, 1VX6|1|A|A|1706

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|A|1688
1VX6|1|A|U|1689
1VX6|1|A|A|1690
1VX6|1|A|G|1691
*
1VX6|1|A|U|1700
1VX6|1|A|G|1701
1VX6|1|A|U|1702
1VX6|1|A|U|1703
1VX6|1|A|U|1704
1VX6|1|A|A|1705
1VX6|1|A|A|1706
1VX6|1|A|A|1707
1VX6|1|A|G|1710
*
1VX6|1|A|C|1723
1VX6|1|A|G|1724
1VX6|1|A|U|1725

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA