J3_1VX6_011

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUAA*UUGAACUC*GUA

Length

18 nucleotides

Bulged bases

1VX6|1|A|U|1855, 1VX6|1|A|U|1965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|U|1854
1VX6|1|A|U|1855
1VX6|1|A|U|1856
1VX6|1|A|A|1857
1VX6|1|A|U|1858
1VX6|1|A|A|1859
1VX6|1|A|A|1860
*
1VX6|1|A|U|1898
1VX6|1|A|U|1899
1VX6|1|A|G|1900
1VX6|1|A|A|1901
1VX6|1|A|A|1902
1VX6|1|A|C|1903
1VX6|1|A|U|1904
1VX6|1|A|C|1905
*
1VX6|1|A|G|1964
1VX6|1|A|U|1965
1VX6|1|A|A|1966

Current chains

Chain A

28S ribosomal RNA

Nearby chains