J3_1VX6_018

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAGCAAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

1VX6|1|A|U|351, 1VX6|1|A|A|359, 1VX6|1|C|U|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_018 not in the Motif Atlas

Geometric match to J3_8P9A_045

Geometric discrepancy: 0.0564

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|C|348
1VX6|1|A|G|349
1VX6|1|A|A|350
1VX6|1|A|U|351
1VX6|1|A|A|352
1VX6|1|A|G|353
1VX6|1|A|C|354
1VX6|1|A|A|355
1VX6|1|A|A|356
1VX6|1|A|A|357
1VX6|1|A|C|358
1VX6|1|A|A|359
1VX6|1|A|A|360
1VX6|1|A|G|361
1VX6|1|A|U|362
1VX6|1|A|A|363
1VX6|1|A|C|364
*
1VX6|1|A|G|371
1VX6|1|A|G|372
1VX6|1|A|A|373
1VX6|1|A|A|374
1VX6|1|A|A|375
1VX6|1|A|G|376
*
1VX6|1|C|C|25
1VX6|1|C|U|26
1VX6|1|C|U|27
1VX6|1|C|G|28

Current chains

Chain A

28S ribosomal RNA

Chain C

5.8S ribosomal RNA

Nearby chains