J3_1VX6_023

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UAUAUAUAAAU*AC

Length

15 nucleotides

Bulged bases

1VX6|1|A|U|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|G|1780
1VX6|1|A|A|1781
*
1VX6|1|A|U|1790
1VX6|1|A|A|1791
1VX6|1|A|U|1792
1VX6|1|A|A|1793
1VX6|1|A|U|1794
1VX6|1|A|A|1795
1VX6|1|A|U|1796
1VX6|1|A|A|1797
1VX6|1|A|A|1798
1VX6|1|A|A|1799
1VX6|1|A|U|1800
*
1VX6|1|A|A|2032
1VX6|1|A|C|2033

Current chains

Chain A

28S ribosomal RNA

Nearby chains