J3_1VX6_025

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAAAG*CUAUCACC*GCAAUAGUUCUUUAA

Length

29 nucleotides

Bulged bases

1VX6|1|A|U|3624, 1VX6|1|A|C|3625, 1VX6|1|A|U|3662, 1VX6|1|A|A|3663, 1VX6|1|A|G|3664, 1VX6|1|A|U|3665, 1VX6|1|A|U|3669, 1VX6|1|A|A|3671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|U|3575
1VX6|1|A|A|3576
1VX6|1|A|A|3577
1VX6|1|A|A|3578
1VX6|1|A|A|3579
1VX6|1|A|G|3580
*
1VX6|1|A|C|3621
1VX6|1|A|U|3622
1VX6|1|A|A|3623
1VX6|1|A|U|3624
1VX6|1|A|C|3625
1VX6|1|A|A|3626
1VX6|1|A|C|3627
1VX6|1|A|C|3628
*
1VX6|1|A|G|3658
1VX6|1|A|C|3659
1VX6|1|A|A|3660
1VX6|1|A|A|3661
1VX6|1|A|U|3662
1VX6|1|A|A|3663
1VX6|1|A|G|3664
1VX6|1|A|U|3665
1VX6|1|A|U|3666
1VX6|1|A|C|3667
1VX6|1|A|U|3668
1VX6|1|A|U|3669
1VX6|1|A|U|3670
1VX6|1|A|A|3671
1VX6|1|A|A|3672

Current chains

Chain A

28S ribosomal RNA

Nearby chains