J3_1VY4_020

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY4_020 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0431

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

1VY4|1|BA|G|1344
1VY4|1|BA|C|1345
1VY4|1|BA|G|1346
1VY4|1|BA|G|1347
1VY4|1|BA|G|1348
1VY4|1|BA|A|1349
1VY4|1|BA|C|1350
*
1VY4|1|BA|G|1381
1VY4|1|BA|G|1382
1VY4|1|BA|C|1383
1VY4|1|BA|A|1384
1VY4|1|BA|G|1385
*
1VY4|1|BA|C|1402
1VY4|1|BA|C|1403

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L23