J3_1VY4_024

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

1VY4|1|BA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY4_024 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.0836

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

1VY4|1|BA|C|2789
1VY4|1|BA|A|2790
1VY4|1|BA|C|2791
*
1VY4|1|BA|G|2805
1VY4|1|BA|G|2807
1VY4|1|BA|U|2808
1VY4|1|BA|A|2809
1VY4|1|BA|A|2810
1VY4|1|BA|G|2811
*
1VY4|1|BA|C|2889
1VY4|1|BA|G|2891
1VY4|1|BA|A|2892
1VY4|1|BA|G|2893
1VY4|1|BA|G|2894

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3