3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1VY4_031 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1095
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

1VY4|1|CA|C|936
1VY4|1|CA|A|937
1VY4|1|CA|A|938
1VY4|1|CA|G|939
*
1VY4|1|CA|C|1344
1VY4|1|CA|U|1345
1VY4|1|CA|A|1346
1VY4|1|CA|G|1347
1VY4|1|CA|U|1348
1VY4|1|CA|A|1349
1VY4|1|CA|A|1350
*
1VY4|1|CA|U|1372
1VY4|1|CA|G|1373
1VY4|1|CA|A|1374
1VY4|1|CA|A|1375
1VY4|1|CA|U|1376
1VY4|1|CA|A|1377
1VY4|1|CA|C|1378
1VY4|1|CA|G|1379

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CG
30S ribosomal protein S7
Chain CI
30S ribosomal protein S9
Chain CY
Transfer RNA; tRNA

Coloring options:


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