J3_1VY4_042

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

1VY4|1|DA|G|686, 1VY4|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY4_042 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0434

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

1VY4|1|DA|C|683
1VY4|1|DA|G|684
1VY4|1|DA|A|685
1VY4|1|DA|G|686
1VY4|1|DA|C|687
1VY4|1|DA|U|688
1VY4|1|DA|A|689
*
1VY4|1|DA|U|773
1VY4|1|DA|A|774
1VY4|1|DA|G|775
*
1VY4|1|DA|C|791
1VY4|1|DA|G|792
1VY4|1|DA|A|793
1VY4|1|DA|G|794

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2