Motif J3_39238.4 Version J3_39238.4 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 2-9 | 3-5 | 6-7 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4WF9_002 | 4WF9 | 0.2209 | 3 | X | LSU rRNA | U | 728 | G | 729 | A | 730 | C | 732 | U | 733 | A | 734 | * | U | 818 | A | 819 | G | 820 | * | C | 836 | A | 839 | cWW | tWH | tSW | cWW | cWW |
| 2 | J3_5J7L_038 | 5J7L | 0.1892 | 3 | DA | LSU rRNA | U | 683 | G | 684 | A | 685 | C | 687 | U | 688 | A | 689 | * | U | 773 | G | 774 | G | 775 | * | C | 791 | A | 794 | cWW | tWH | tSW | cWW | cWW |
| 3 | J3_5TBW_004 | 5TBW | 0.1837 | 3 | 1 | LSU rRNA | U | 814 | G | 815 | A | 816 | C | 818 | U | 819 | A | 820 | * | U | 905 | A | 906 | G | 907 | * | C | 923 | A | 926 | cWW | tWH | tSW | cWW | cWW |
| 4 | J3_8C3A_003 | 8C3A | 0.1956 | 3 | 1 | LSU rRNA | U | 810 | G | 811 | A | 812 | C | 814 | U | 815 | A | 816 | * | U | 901 | A | 902 | G | 903 | * | C | 919 | A | 922 | cWW | tWH | tSW | cWW | cWW |
| 5 | J3_4V9F_002 | 4V9F | 0.1624 | 3 | 0 | LSU rRNA | C | 774 | G | 775 | A | 776 | C | 778 | U | 779 | A | 780 | * | U | 866 | A | 867 | G | 868 | * | C | 884 | G | 887 | cWW | tWH | tSW | cWW | cWW |
| 6 | J3_7A0S_004 | 7A0S | 0.1252 | 3 | X | LSU rRNA | U | 696 | G | 697 | A | 698 | C | 700 | U | 701 | A | 702 | * | U | 786 | A | 787 | G | 788 | * | C | 804 | A | 807 | cWW | tWH | tSW | cWW | cWW |
| 7 | J3_7RQB_004 | 7RQB | 0.0000 | 3 | 1A | LSU rRNA | C | 683 | G | 684 | A | 685 | C | 687 | U | 688 | A | 689 | * | U | 773 | A | 774 | G | 775 | * | C | 791 | G | 794 | cWW | tWH | tSW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAACUA*UAG*CGAA | 2 |
| UGAUCUA*UAG*CGAA | 1 |
| UGAUCUA*UGG*CAAA | 1 |
| CGAUCUA*UAG*CGAG | 1 |
| UGAGCUA*UAG*CGAA | 1 |
| CGAGCUA*UAG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUCU*A*GA | 2 |
| GAACU*A*GA | 2 |
| GAGCU*A*GA | 2 |
| GAUCU*G*AA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Heat map statistics
- Min 0.07 | Avg 0.12 | Max 0.22
Coloring options: