J3_1VY4_059
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 1VY4|1|BA|U|448, 1VY4|1|BA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY4_059 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0549
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
1VY4|1|BA|C|32
1VY4|1|BA|U|33
1VY4|1|BA|C|34
1VY4|1|BA|G|35
*
1VY4|1|BA|C|445
1VY4|1|BA|G|446
1VY4|1|BA|A|447
1VY4|1|BA|U|448
1VY4|1|BA|A|449
1VY4|1|BA|G|450
1VY4|1|BA|C|451
1VY4|1|BA|G|452
1VY4|1|BA|C|453
1VY4|1|BA|A|454
1VY4|1|BA|C|455
1VY4|1|BA|C|456
1VY4|1|BA|A|457
1VY4|1|BA|G|458
1VY4|1|BA|U|459
1VY4|1|BA|A|460
1VY4|1|BA|C|461
*
1VY4|1|BA|G|468
1VY4|1|BA|G|469
1VY4|1|BA|A|470
1VY4|1|BA|A|471
1VY4|1|BA|A|472
1VY4|1|BA|G|473
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- 50S ribosomal protein L34
- Chain BF
- 50S ribosomal protein L4
- Chain BU
- 50S ribosomal protein L20
- Chain BX
- 50S ribosomal protein L23
Coloring options: