J3_9DFE_003
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9DFE|1|1A|U|448, 9DFE|1|1A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DFE|1|1A|C|32
9DFE|1|1A|U|33
9DFE|1|1A|C|34
9DFE|1|1A|G|35
*
9DFE|1|1A|C|445
9DFE|1|1A|G|446
9DFE|1|1A|A|447
9DFE|1|1A|U|448
9DFE|1|1A|A|449
9DFE|1|1A|G|450
9DFE|1|1A|C|451
9DFE|1|1A|G|452
9DFE|1|1A|C|453
9DFE|1|1A|A|454
9DFE|1|1A|C|455
9DFE|1|1A|C|456
9DFE|1|1A|A|457
9DFE|1|1A|G|458
9DFE|1|1A|U|459
9DFE|1|1A|A|460
9DFE|1|1A|C|461
*
9DFE|1|1A|G|468
9DFE|1|1A|G|469
9DFE|1|1A|A|470
9DFE|1|1A|A|471
9DFE|1|1A|A|472
9DFE|1|1A|G|473
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1X
- 50S ribosomal protein L23
Coloring options: