J3_1VY4_060

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

1VY4|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY4_060 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0474

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1VY4|1|BA|C|297
1VY4|1|BA|G|298
1VY4|1|BA|A|299
1VY4|1|BA|A|300
1VY4|1|BA|G|301
*
1VY4|1|BA|C|316
1VY4|1|BA|G|317
1VY4|1|BA|C|318
1VY4|1|BA|C|319
1VY4|1|BA|A|320
1VY4|1|BA|G|321
1VY4|1|BA|A|322
1VY4|1|BA|G|323
1VY4|1|BA|A|324
1VY4|1|BA|G|325
*
1VY4|1|BA|C|337
1VY4|1|BA|G|338
1VY4|1|BA|U|339
1VY4|1|BA|A|340
1VY4|1|BA|G|341

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24