J3_9DFE_006

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9DFE|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9DFE|1|1A|C|297
9DFE|1|1A|G|298
9DFE|1|1A|A|299
9DFE|1|1A|A|300
9DFE|1|1A|G|301
*
9DFE|1|1A|C|316
9DFE|1|1A|G|317
9DFE|1|1A|C|318
9DFE|1|1A|C|319
9DFE|1|1A|A|320
9DFE|1|1A|G|321
9DFE|1|1A|A|322
9DFE|1|1A|G|323
9DFE|1|1A|A|324
9DFE|1|1A|G|325
*
9DFE|1|1A|C|337
9DFE|1|1A|G|338
9DFE|1|1A|U|339
9DFE|1|1A|A|340
9DFE|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24