J3_1VY4_065

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

1VY4|1|CA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY4_065 not in the Motif Atlas

Homologous match to J3_6CZR_025

Geometric discrepancy: 0.1778

The information below is about J3_6CZR_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.1

Basepair signature

cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

1VY4|1|CA|C|1116
1VY4|1|CA|G|1117
1VY4|1|CA|C|1118
*
1VY4|1|CA|G|1155
1VY4|1|CA|G|1156
1VY4|1|CA|A|1157
1VY4|1|CA|C|1158
1VY4|1|CA|U|1159
1VY4|1|CA|G|1160
1VY4|1|CA|C|1161
*
1VY4|1|CA|G|1175
1VY4|1|CA|A|1176
1VY4|1|CA|G|1177
1VY4|1|CA|G|1178
1VY4|1|CA|A|1179
1VY4|1|CA|A|1180
1VY4|1|CA|G|1181
1VY4|1|CA|G|1182
1VY4|1|CA|A|1183
1VY4|1|CA|G|1184

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CI

30S ribosomal protein S9

Chain CN

30S ribosomal protein S14 type Z