J3_1VY4_069
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY4_069 not in the Motif Atlas
- Homologous match to J3_9DFE_013
- Geometric discrepancy: 0.0666
- The information below is about J3_9DFE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
1VY4|1|DA|G|1424
1VY4|1|DA|G|1425
1VY4|1|DA|G|1426
1VY4|1|DA|A|1427
1VY4|1|DA|C|1428
1VY4|1|DA|G|1429
*
1VY4|1|DA|C|1564
1VY4|1|DA|C|1565
*
1VY4|1|DA|G|1568
1VY4|1|DA|A|1569
1VY4|1|DA|A|1570
1VY4|1|DA|A|1571
1VY4|1|DA|A|1572
1VY4|1|DA|G|1573
1VY4|1|DA|C|1574
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain DD
- 50S ribosomal protein L2
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