J3_1VY5_006
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY5_006 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0732
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1VY5|1|AA|U|943
1VY5|1|AA|G|944
1VY5|1|AA|G|945
1VY5|1|AA|A|946
*
1VY5|1|AA|U|1235
1VY5|1|AA|A|1236
1VY5|1|AA|C|1237
*
1VY5|1|AA|G|1337
1VY5|1|AA|G|1338
1VY5|1|AA|A|1339
1VY5|1|AA|A|1340
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AI
- 30S ribosomal protein S9
- Chain AM
- 30S ribosomal protein S13
- Chain AU
- 30S ribosomal protein Thx
- Chain AX
- Transfer RNA; tRNA
- Chain AY
- Transfer RNA; tRNA
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