J3_1VY5_024

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1VY5|1|BA|A|2518, 1VY5|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY5_024 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0392

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

1VY5|1|BA|C|2517
1VY5|1|BA|A|2518
1VY5|1|BA|U|2519
1VY5|1|BA|C|2520
*
1VY5|1|BA|G|2545
1VY5|1|BA|U|2546
1VY5|1|BA|U|2547
*
1VY5|1|BA|A|2561
1VY5|1|BA|U|2562
1VY5|1|BA|U|2563
1VY5|1|BA|A|2564
1VY5|1|BA|A|2565
1VY5|1|BA|A|2566
1VY5|1|BA|G|2567

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L14