Motif J3_32601.3 Version J3_32601.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 2-6 | 5-9 | 5-10 | 7-8 | 7-11 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7A0S_011 | 7A0S | 0.1807 | 2 | X | LSU rRNA | A | 2540 | U | 2541 | U | 2542 | A | 2543 | A | 2544 | A | 2545 | G | 2546 | * | C | 2496 | C | 2499 | * | G | 2524 | U | 2525 | U | 2526 | cWW | tWH | tSs | cWW | cHW | cWW | |
| 2 | J3_7RQB_012 | 7RQB | 0.1804 | 2 | 1A | LSU rRNA | A | 2561 | U | 2562 | U | 2563 | A | 2564 | A | 2565 | A | 2566 | G | 2567 | * | C | 2517 | C | 2520 | * | G | 2545 | U | 2546 | U | 2547 | cWW | tWH | ncSs | tSs | cWW | cHW | cWW |
| 3 | J3_4WF9_009 | 4WF9 | 0.1189 | 2 | X | LSU rRNA | A | 2588 | U | 2589 | U | 2590 | A | 2591 | A | 2592 | A | 2593 | G | 2594 | * | C | 2544 | C | 2547 | * | G | 2572 | U | 2573 | U | 2574 | cWW | tWH | tSs | cWW | cHW | cWW | |
| 4 | J3_5J7L_046 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 2561 | U | 2562 | U | 2563 | A | 2564 | A | 2565 | A | 2566 | G | 2567 | * | C | 2517 | C | 2520 | * | G | 2545 | U | 2546 | A | 2547 | cWW | tWH | ncSs | tSs | cWW | cHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUC*GUU*AUUAAAG | 3 |
| CAUC*GUA*UUUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*U*UUAAA | 4 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.09 | Max 0.18
Coloring options: