J3_1VY5_046

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

1VY5|1|DA|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY5_046 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.069

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1VY5|1|DA|C|1298
1VY5|1|DA|G|1299
1VY5|1|DA|U|1300
1VY5|1|DA|A|1301
1VY5|1|DA|A|1302
1VY5|1|DA|G|1303
*
1VY5|1|DA|C|1625
1VY5|1|DA|G|1626
1VY5|1|DA|G|1627
*
1VY5|1|DA|U|1639
1VY5|1|DA|C|1640
1VY5|1|DA|A|1641
1VY5|1|DA|G|1642

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains