J3_1VY6_008

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY6_008 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.185

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

1VY6|1|AA|C|990
1VY6|1|AA|U|991
1VY6|1|AA|U|992
1VY6|1|AA|G|993
*
1VY6|1|AA|C|1045
1VY6|1|AA|A|1046
1VY6|1|AA|G|1047
*
1VY6|1|AA|C|1210
1VY6|1|AA|U|1211
1VY6|1|AA|U|1212
1VY6|1|AA|A|1213
1VY6|1|AA|C|1214
1VY6|1|AA|G|1215

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14 type Z