J3_1VY6_010
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY6_010 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0687
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
1VY6|1|AA|C|1063
1VY6|1|AA|G|1064
1VY6|1|AA|U|1065
1VY6|1|AA|C|1066
1VY6|1|AA|A|1067
1VY6|1|AA|G|1068
*
1VY6|1|AA|C|1107
1VY6|1|AA|G|1108
1VY6|1|AA|C|1109
1VY6|1|AA|A|1110
1VY6|1|AA|A|1111
1VY6|1|AA|C|1112
1VY6|1|AA|C|1113
*
1VY6|1|AA|G|1187
1VY6|1|AA|A|1188
1VY6|1|AA|C|1189
1VY6|1|AA|G|1190
1VY6|1|AA|A|1191
1VY6|1|AA|C|1192
1VY6|1|AA|G|1193
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AE
- 30S ribosomal protein S5
- Chain AG
- 30S ribosomal protein S7
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14 type Z
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