J3_1VY6_060
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 1VY6|1|BA|A|2388, 1VY6|1|BA|U|2390, 1VY6|1|BA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY6_060 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0631
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
1VY6|1|BA|G|2282
1VY6|1|BA|C|2283
1VY6|1|BA|C|2284
*
1VY6|1|BA|G|2384
1VY6|1|BA|C|2385
1VY6|1|BA|C|2386
1VY6|1|BA|U|2387
1VY6|1|BA|A|2388
1VY6|1|BA|G|2389
1VY6|1|BA|U|2390
1VY6|1|BA|G|2391
1VY6|1|BA|A|2392
1VY6|1|BA|A|2393
1VY6|1|BA|C|2394
1VY6|1|BA|C|2395
*
1VY6|1|BA|G|2421
1VY6|1|BA|A|2422
1VY6|1|BA|U|2423
1VY6|1|BA|C|2424
1VY6|1|BA|A|2425
1VY6|1|BA|A|2426
1VY6|1|BA|C|2427
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L27
- Chain B1
- 50S ribosomal protein L28
- Chain B6
- 50S ribosomal protein L33
- Chain B8
- 50S ribosomal protein L35
- Chain BP
- 50S ribosomal protein L15
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