Motif J3_04772.2 Version J3_04772.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 1-19 | 3-4 | 10-18 | 11-17 | 12-16 | 14-15 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8B0X_036 | 8B0X | 0.3138 | 3 | a | LSU rRNA | G | 2286 | C | 2287 | A | 2288 | * | U | 2388 | C | 2389 | A | 2390 | U | 2391 | A | 2392 | G | 2393 | G | 2395 | A | 2396 | U | 2397 | C | 2398 | C | 2399 | * | G | 2425 | C | 2426 | C | 2428 | A | 2429 | C | 2431 | cWW | cWW | tHW | cWW | ||
| 2 | J3_9DFE_015 | 9DFE | 0.2985 | 3 | 1A | LSU rRNA | G | 2282 | C | 2283 | C | 2284 | * | G | 2384 | C | 2385 | C | 2386 | U | 2387 | A | 2388 | G | 2389 | G | 2391 | A | 2392 | A | 2393 | C | 2394 | C | 2395 | * | G | 2421 | A | 2422 | C | 2424 | A | 2425 | C | 2427 | cWW | cWW | tHW | tHW | cWW | |
| 3 | J3_7A0S_020 | 7A0S | 0.2967 | 3 | X | LSU rRNA | G | 2261 | C | 2262 | C | 2263 | * | G | 2363 | C | 2364 | U | 2365 | U | 2366 | A | 2367 | G | 2368 | G | 2370 | A | 2371 | A | 2372 | C | 2373 | C | 2374 | * | G | 2400 | A | 2401 | C | 2403 | A | 2404 | C | 2406 | cWW | cWW | tHW | cWW | ||
| 4 | J3_8GLP_034 | 8GLP | 0.0610 | 2 | L5 | LSU rRNA | OMG | 4228 | U | 4229 | C | 4230 | * | G | 4331 | C | 4332 | C | 4333 | U | 4334 | C | 4335 | A | 4336 | G | 4338 | A | 4339 | U | 4340 | C | 4341 | C | 4342 | * | OMG | 4370 | G | 4371 | U | 4372 | G | 4373 | C | 4375 | cWW | cWW | tHh | tHW | tHW | cWW |
| 5 | J3_9H3G_022 | 9H3G | 0.0000 | 2 | A | LSU rRNA | OMG | 2650 | U | 2651 | C | 2652 | * | G | 2753 | C | 2754 | C | 2755 | U | 2756 | A | 2757 | U | 2758 | G | 2760 | A | 2761 | U | 2762 | C | 2763 | C | 2764 | * | OMG | 2792 | G | 2793 | U | 2794 | G | 2795 | C | 2797 | cWW | cWW | tHh | tHW | tHW | cWW |
| 6 | J3_8OI5_020 | 8OI5 | 0.0580 | 2 | 1 | LSU rRNA | G | 2623 | U | 2624 | C | 2625 | * | G | 2726 | C | 2727 | C | 2728 | U | 2729 | A | 2730 | U | 2731 | G | 2733 | A | 2734 | U | 2735 | C | 2736 | C | 2737 | * | G | 2765 | G | 2766 | U | 2767 | G | 2768 | C | 2770 | cWW | cWW | tHh | tHW | tHW | cWW |
| 7 | J3_8P9A_061 | 8P9A | 0.0759 | 2 | AR | LSU rRNA | G | 2651 | U | 2652 | C | 2653 | * | G | 2754 | C | 2755 | C | 2756 | U | 2757 | A | 2758 | U | 2759 | G | 2761 | A | 2762 | U | 2763 | C | 2764 | C | 2765 | * | G | 2793 | G | 2794 | U | 2795 | G | 2796 | C | 2798 | cWW | cWW | tHh | tHW | ntHW | cWW |
| 8 | J3_9AXU_021 | 9AXU | 0.1291 | 2 | 2 | LSU rRNA | G | 2746 | U | 2747 | C | 2748 | * | G | 2849 | C | 2850 | C | 2851 | U | 2852 | A | 2853 | U | 2854 | G | 2856 | A | 2857 | U | 2858 | C | 2859 | C | 2860 | * | G | 2888 | G | 2889 | U | 2890 | G | 2891 | C | 2893 | cWW | cWW | tHh | tHW | tHW | cWW |
| 9 | J3_9E6Q_015 | 9E6Q | 0.1708 | 2 | 1 | LSU rRNA | G | 2394 | C | 2395 | C | 2396 | * | G | 2499 | C | 2500 | C | 2501 | U | 2502 | A | 2503 | G | 2504 | G | 2506 | A | 2507 | A | 2508 | C | 2509 | G | 2510 | * | OMC | 2538 | A | 2539 | U | 2540 | G | 2541 | C | 2543 | cWW | cWW | tHh | tHW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUC*GCCUAUCGAUCC*GGUGCC | 3 |
| GCA*UCAUAGUGAUCC*GCUCAAC | 1 |
| GCC*GCCUAGUGAACC*GAUCAAC | 1 |
| GCC*GCUUAGUGAACC*GAUCAAC | 1 |
| OMGUC*GCCUCACGAUCC*OMGGUGUC | 1 |
| OMGUC*GCCUAUCGAUCC*OMGGUGUC | 1 |
| GCC*GCCUAGAGAACG*OMCAUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*CCUAUCGAUC*GUGC | 3 |
| C*CAUAGUGAUC*CUCAA | 1 |
| C*CCUAGUGAAC*AUCAA | 1 |
| C*CUUAGUGAAC*AUCAA | 1 |
| U*CCUCACGAUC*GUGU | 1 |
| U*CCUAUCGAUC*GUGU | 1 |
| C*CCUAGAGAAC*AUGA | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.20 | Max 0.36
Coloring options: