J3_1VY7_009

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_009 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.2699

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|AA|G|1002
1VY7|1|AA|G|1003
1VY7|1|AA|A|1004
1VY7|1|AA|A|1005
1VY7|1|AA|C|1006
*
1VY7|1|AA|G|1023
1VY7|1|AA|G|1024
1VY7|1|AA|U|1025
1VY7|1|AA|G|1026
1VY7|1|AA|C|1027
1VY7|1|AA|C|1028
*
1VY7|1|AA|G|1033
1VY7|1|AA|G|1034
1VY7|1|AA|A|1035
1VY7|1|AA|G|1036
1VY7|1|AA|C|1037
1VY7|1|AA|C|1038

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains