J3_1VY7_016
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 1VY7|1|BA|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY7_016 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.0584
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VY7|1|BA|U|269
1VY7|1|BA|A|270
1VY7|1|BA|A|271
1VY7|1|BA|A|271|||A
1VY7|1|BA|C|271|||B
*
1VY7|1|BA|G|271|||V
1VY7|1|BA|G|271|||W
1VY7|1|BA|G|271|||X
1VY7|1|BA|U|271|||Y
1VY7|1|BA|C|271|||Z
1VY7|1|BA|G|272
1VY7|1|BA|U|272|||A
1VY7|1|BA|G|272|||B
*
1VY7|1|BA|C|366
1VY7|1|BA|G|370
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BI
- 50S ribosomal protein L9
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