J3_1VY7_025

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CACG*CGGUAAG*CGAGG

Length

16 nucleotides

Bulged bases

1VY7|1|BA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY7|1|BA|C|2789
1VY7|1|BA|A|2790
1VY7|1|BA|C|2791
1VY7|1|BA|G|2792
*
1VY7|1|BA|C|2804
1VY7|1|BA|G|2805
1VY7|1|BA|G|2807
1VY7|1|BA|U|2808
1VY7|1|BA|A|2809
1VY7|1|BA|A|2810
1VY7|1|BA|G|2811
*
1VY7|1|BA|C|2889
1VY7|1|BA|G|2891
1VY7|1|BA|A|2892
1VY7|1|BA|G|2893
1VY7|1|BA|G|2894

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BW

50S ribosomal protein L22