J3_1VY7_027
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 1VY7|1|BB|U|14, 1VY7|1|BB|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY7_027 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.0813
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VY7|1|BB|C|11
1VY7|1|BB|C|12
1VY7|1|BB|A|13
1VY7|1|BB|U|14
1VY7|1|BB|A|15
1VY7|1|BB|G|16
*
1VY7|1|BB|C|68
1VY7|1|BB|G|69
*
1VY7|1|BB|U|108
1VY7|1|BB|C|109
1VY7|1|BB|G|110
Current chains
- Chain BB
- 5S Ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS
- 50S ribosomal protein L18
- Chain BZ
- 50S ribosomal protein L25
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