J3_1VY7_028

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_028 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.107

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1VY7|1|CA|G|46
1VY7|1|CA|C|47
*
1VY7|1|CA|G|361
1VY7|1|CA|G|362
1VY7|1|CA|A|363
1VY7|1|CA|A|364
1VY7|1|CA|U|365
1VY7|1|CA|C|366
1VY7|1|CA|U|367
*
1VY7|1|CA|A|393
1VY7|1|CA|G|394
1VY7|1|CA|C|395

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16