J3_1VY7_037

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_037 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.2072

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1VY7|1|CA|U|1073
1VY7|1|CA|G|1074
*
1VY7|1|CA|U|1083
1VY7|1|CA|G|1084
1VY7|1|CA|U|1085
1VY7|1|CA|U|1086
1VY7|1|CA|G|1087
*
1VY7|1|CA|C|1098
1VY7|1|CA|G|1099
1VY7|1|CA|C|1100
1VY7|1|CA|A|1101
1VY7|1|CA|A|1102

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CE

30S ribosomal protein S5