J3_1VY7_038

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

1VY7|1|CA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_038 not in the Motif Atlas

Homologous match to J3_5J7L_010

Geometric discrepancy: 0.2302

The information below is about J3_5J7L_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

1VY7|1|CA|C|1116
1VY7|1|CA|G|1117
1VY7|1|CA|C|1118
*
1VY7|1|CA|G|1155
1VY7|1|CA|G|1156
1VY7|1|CA|A|1157
1VY7|1|CA|C|1158
*
1VY7|1|CA|G|1181
1VY7|1|CA|G|1182
1VY7|1|CA|A|1183
1VY7|1|CA|G|1184

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CI

30S ribosomal protein S9

Chain CN

30S ribosomal protein S14 type Z