J3_1VY7_044

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_044 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0668

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

1VY7|1|DA|C|698
1VY7|1|DA|A|699
1VY7|1|DA|G|700
*
1VY7|1|DA|C|732
1VY7|1|DA|G|733
1VY7|1|DA|A|734
1VY7|1|DA|A|735
1VY7|1|DA|C|736
*
1VY7|1|DA|G|760
1VY7|1|DA|A|761
1VY7|1|DA|U|762
1VY7|1|DA|G|763

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2