J3_1VY7_073
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 1VY7|1|DA|G|2334, 1VY7|1|DA|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VY7_073 not in the Motif Atlas
- Homologous match to J3_9DFE_016
- Geometric discrepancy: 0.096
- The information below is about J3_9DFE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1VY7|1|DA|C|2295
1VY7|1|DA|U|2296
1VY7|1|DA|C|2297
*
1VY7|1|DA|G|2321
1VY7|1|DA|A|2322
1VY7|1|DA|G|2323
*
1VY7|1|DA|U|2332
1VY7|1|DA|A|2333
1VY7|1|DA|G|2334
1VY7|1|DA|A|2335
1VY7|1|DA|A|2336
1VY7|1|DA|G|2337
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CX
- Transfer RNA; tRNA
- Chain D0
- 50S ribosomal protein L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DG
- 50S ribosomal protein L5
- Chain DS
- 50S ribosomal protein L18
Coloring options: