J3_1W2B_006

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

1W2B|1|0|G|1683, 1W2B|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1W2B_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0627

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1W2B|1|0|U|1412
1W2B|1|0|A|1413
1W2B|1|0|A|1414
1W2B|1|0|G|1415
*
1W2B|1|0|C|1680
1W2B|1|0|G|1681
1W2B|1|0|A|1682
1W2B|1|0|G|1683
1W2B|1|0|A|1684
1W2B|1|0|A|1685
1W2B|1|0|C|1686
*
1W2B|1|0|G|1695
1W2B|1|0|U|1696
1W2B|1|0|G|1697

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L39E

Chain O

50S RIBOSOMAL PROTEIN L19E

Chain Z

RIBOSOMAL PROTEIN L37E