J3_1W2B_014

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CC*GUCGAU*AACAG

Length

13 nucleotides

Bulged bases

1W2B|1|0|C|2850, 1W2B|1|0|A|2852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1W2B_014 not in the Motif Atlas

Geometric match to J3_4V9F_019

Geometric discrepancy: 0.1271

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1W2B|1|0|C|2831
1W2B|1|0|C|2832
*
1W2B|1|0|G|2848
1W2B|1|0|U|2849
1W2B|1|0|C|2850
1W2B|1|0|G|2851
1W2B|1|0|A|2852
1W2B|1|0|U|2853
*
1W2B|1|0|A|2905
1W2B|1|0|A|2906
1W2B|1|0|C|2907
1W2B|1|0|A|2908
1W2B|1|0|G|2909

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain Q

50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22

Chain W

50S RIBOSOMAL PROTEIN L31E