J3_1W2B_017
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- ACGAAG*CGUGAUACAG*CGUACU
- Length
- 22 nucleotides
- Bulged bases
- 1W2B|1|0|U|328
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1W2B_017 not in the Motif Atlas
- Homologous match to J3_4V9F_015
- Geometric discrepancy: 0.0506
- The information below is about J3_4V9F_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59706.1
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
1W2B|1|0|A|302
1W2B|1|0|C|303
1W2B|1|0|G|304
1W2B|1|0|A|305
1W2B|1|0|A|306
1W2B|1|0|G|307
*
1W2B|1|0|C|323
1W2B|1|0|G|324
1W2B|1|0|U|325
1W2B|1|0|G|326
1W2B|1|0|A|327
1W2B|1|0|U|328
1W2B|1|0|A|329
1W2B|1|0|C|330
1W2B|1|0|A|331
1W2B|1|0|G|332
*
1W2B|1|0|C|344
1W2B|1|0|G|345
1W2B|1|0|U|346
1W2B|1|0|A|347
1W2B|1|0|C|348
1W2B|1|0|U|349
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L4P
- Chain S
- RIBOSOMAL PROTEIN L24
Coloring options: