J3_1XNQ_003

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1XNQ_003 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0591

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1XNQ|1|A|U|943
1XNQ|1|A|G|944
1XNQ|1|A|G|945
1XNQ|1|A|A|946
*
1XNQ|1|A|U|1235
1XNQ|1|A|A|1236
1XNQ|1|A|C|1237
*
1XNQ|1|A|G|1337
1XNQ|1|A|G|1338
1XNQ|1|A|A|1339
1XNQ|1|A|A|1340

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein S9

Chain M

Ribosomal protein S13

Chain V

Ribosomal protein THX