3D structure

PDB id
1XNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1XNQ_007 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.0567
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

1XNQ|1|A|C|1063
1XNQ|1|A|G|1064
1XNQ|1|A|U|1065
1XNQ|1|A|C|1066
1XNQ|1|A|A|1067
1XNQ|1|A|G|1068
*
1XNQ|1|A|C|1107
1XNQ|1|A|G|1108
1XNQ|1|A|C|1109
1XNQ|1|A|A|1110
1XNQ|1|A|A|1111
1XNQ|1|A|C|1112
1XNQ|1|A|C|1113
*
1XNQ|1|A|G|1187
1XNQ|1|A|A|1188
1XNQ|1|A|C|1189
1XNQ|1|A|G|1190
1XNQ|1|A|A|1191
1XNQ|1|A|C|1192
1XNQ|1|A|G|1193

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein S2
Chain C
Ribosomal protein S3
Chain E
Ribosomal protein S5
Chain G
Ribosomal protein S7
Chain I
Ribosomal protein S9
Chain J
Ribosomal protein S10
Chain N
Ribosomal protein S14

Coloring options:


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