3D structure

PDB id
1XNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
UG*UGUU*GCAA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1XNQ_016 not in the Motif Atlas
Homologous match to J3_4LFB_017
Geometric discrepancy: 0.0714
The information below is about J3_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_79369.1
Basepair signature
cWW-cWW-tSS-F-F-cWW-F
Number of instances in this motif group
1

Unit IDs

1XNQ|1|A|U|1073
1XNQ|1|A|G|1074
*
1XNQ|1|A|U|1083
1XNQ|1|A|G|1084
1XNQ|1|A|U|1085
1XNQ|1|A|U|1086
*
1XNQ|1|A|G|1099
1XNQ|1|A|C|1100
1XNQ|1|A|A|1101
1XNQ|1|A|A|1102

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein S2
Chain E
Ribosomal protein S5

Coloring options:


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