J3_1Y26_001

3D structure

PDB id

1Y26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A-riboswitch-adenine complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AUAAU*AGUUUCUACC*GAUU

Length

19 nucleotides

Bulged bases

1Y26|1|X|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44163.2

Basepair signature

cWW-cWS-cWW-F-tWS-F-F-cWW-cWW-cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

1Y26|1|X|A|21
1Y26|1|X|U|22
1Y26|1|X|A|23
1Y26|1|X|A|24
1Y26|1|X|U|25
*
1Y26|1|X|A|45
1Y26|1|X|G|46
1Y26|1|X|U|47
1Y26|1|X|U|48
1Y26|1|X|U|49
1Y26|1|X|C|50
1Y26|1|X|U|51
1Y26|1|X|A|52
1Y26|1|X|C|53
1Y26|1|X|C|54
*
1Y26|1|X|G|72
1Y26|1|X|A|73
1Y26|1|X|U|74
1Y26|1|X|U|75

Current chains

Chain X

Vibrio vulnificus A-riboswitch

Nearby chains