Motif J3_44163.4 Version J3_44163.4 of this group appears in releases 4.1 to 4.1

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10		11		12		13		14	break		15		16		17		18	1-8	1-18	2-12	3-7	4-5	5-6	7-13	8-11	10-18	14-15
1	J3_3SKI_001	3SKI	0.7070	1	A	2dG-I riboswitch aptamer	A	30	C	31	A	32	G	33	G	34	*	U	52	G	53	A	54	C	56	C	57	C	58	G	59	C	60	C	61	*	G	78	A	79	C	80	U	81		cWW	cWW		cSH	cWW	cWW		cWS	cWW
2	J3_3SKL_002	3SKL	0.6972	1	B	2dG-I riboswitch aptamer	A	29	C	30	A	31	G	32	G	33	*	U	51	G	52	A	53	C	55	C	56	C	57	G	58	C	59	C	60	*	G	77	A	78	C	79	U	80		cWW	cWW		cSH	cWW	cWW		cWS	cWW
3	J3_9IWF_003	9IWF	0.3443	1	B	Purine riboswitch	A	7	U	8	A	9	A	10	G	11	*	C	31	G	32	U	33	U	35	C	36	G	37	A	38	C	39	C	40	*	G	62	G	63	C	64	U	65	ncSs	cWW	cWW	tWS		cWW	cWW	tWW	cWS	cWW
4	J3_3LA5_001	3LA5	0.1064	1	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	C	47	U	49	C	50	C	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75		cWW	cWW	tWS		cWW	cWW		cWS	cWW
5	J3_4LX6_001	4LX6	0.1138	1	A	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	C	47	U	49	C	50	C	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75		cWW	cWW	tWS		cWW	cWW		cWS	cWW
6	J3_4XNR_001	4XNR	0.0875	1	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	U	74	U	75	ncSs	cWW	cWW	tWS		cWW	cWW	ntWH	cWS	cWW
7	J3_1Y26_001	1Y26	0.0966	1	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	U	74	U	75		cWW	cWW	tWS		cWW	cWW	ntWH	cWS	cWW
8	J3_1Y27_001	1Y27	0.0913	1	X	Purine riboswitch	A	21	U	22	A	23	A	24	U	25	*	A	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75		cWW	cWW	tWS		cWW	cWW		cWS	cWW
9	J3_3RKF_003	3RKF	0.0000	1	C	Purine riboswitch	A	21	U	22	A	23	A	24	C	25	*	G	45	G	46	U	47	U	49	C	50	U	51	A	52	C	53	C	54	*	G	72	A	73	C	74	U	75	ncSs	cWW	cWW	tWS		cWW	cWW	ntWH	cWS	cWW
10	J3_3IVN_001	3IVN	0.7223	1	A	Purine riboswitch	A	12	U	13	A	14	A	15	C	16	*	G	36	G	37	U	38	U	40	C	41	U	42	A	43	C	44	C	45	*	G	63	A	64	C	65	U	66		cWW	cWW	tWS		cWW	cWW		cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACAGGUGACCCCGCCGACU	2
AUAAUAGCUUCCACCGACU	2
AUAAUAGUUUCUACCGAUU	2
AUAAGCGUUUCGACCGGCU	1
AUAAUAGUUUCUACCGACU	1
AUAACGGUUUCUACCGACU	1
AUAACGGUGUCUACCGACU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAGGACCCCGCAC	2
UAAGCUUCCACAC	2
UAAGUUUCUACAU	2
UAAGUUUCUACAC	2
UAAGUUUCGACGC	1
UAAGUGUCUACAC	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (10)
Basepair signature: cWW-cWS-cWW-F-tWS-F-F-cWW-cWW-cWW-F-F-F
Heat map statistics: Min 0.04 | Avg 0.43 | Max 0.95

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Coloring options: Nucleotide numbers

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