J3_1Y69_002

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1Y69|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y69_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2638

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1Y69|1|0|C|710
1Y69|1|0|C|711
1Y69|1|0|A|712
1Y69|1|0|G|713
*
1Y69|1|0|C|745
1Y69|1|0|G|746
1Y69|1|0|A|747
1Y69|1|0|A|748
1Y69|1|0|C|749
*
1Y69|1|0|G|773
1Y69|1|0|A|774
1Y69|1|0|U|775
1Y69|1|0|G|776
1Y69|1|0|A|777
1Y69|1|0|G|778

Current chains

Chain 0

23S ribosomal RNA

Nearby chains