J3_1Y69_005

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1Y69|1|0|C|1623, 1Y69|1|0|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y69_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2338

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

1Y69|1|0|C|1319
1Y69|1|0|A|1320
1Y69|1|0|A|1321
1Y69|1|0|G|1322
*
1Y69|1|0|C|1621
1Y69|1|0|G|1622
1Y69|1|0|C|1623
1Y69|1|0|A|1624
1Y69|1|0|A|1625
1Y69|1|0|A|1626
1Y69|1|0|C|1627
*
1Y69|1|0|G|1636
1Y69|1|0|U|1637
1Y69|1|0|G|1638

Current chains

Chain 0

23S ribosomal RNA

Nearby chains