J3_1Y69_011

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AC*GAAAAGC*GAUGU

Length

14 nucleotides

Bulged bases

1Y69|1|0|A|70, 1Y69|1|0|A|71, 1Y69|1|0|A|72, 1Y69|1|0|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y69_011 not in the Motif Atlas

Homologous match to J3_4WF9_013

Geometric discrepancy: 0.4449

The information below is about J3_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

1Y69|1|0|A|55
1Y69|1|0|C|56
*
1Y69|1|0|G|69
1Y69|1|0|A|70
1Y69|1|0|A|71
1Y69|1|0|A|72
1Y69|1|0|A|73
1Y69|1|0|G|74
1Y69|1|0|C|75
*
1Y69|1|0|G|108
1Y69|1|0|A|109
1Y69|1|0|U|110
1Y69|1|0|G|111
1Y69|1|0|U|112

Current chains

Chain 0

23S ribosomal RNA

Nearby chains